| Protocol | Download genotype project | description |
|---|---|---|
| Exome capture HapMap | 2019 HapMap | 337 accessions, 7.5M markers meta data |
| Exome capture Diversity | 2019_Diversity | 1000 accessions, Passport |
| Exome capture Watkins | Watkins Core 2017 | meta data |
| MRASeq RGON | RGON 2023 | |
| Exome capture PHG472 | PHG472 |
| Protocol | Download genotype project | accessions | Cluster with PHG | Imputation accuracy vs 2019_HapMap |
|---|---|---|---|---|
| Infinium 90K v2.1 | TCAP90K_HWWAMP | 295 | 96% - details | |
| TCAP90K_SpringAM_panel | 245 | 81% - details | ||
| TCAP90K_YQV14 | 216 | 95% - details | ||
| TCAP90K_CSRVAL14 | 116 | PCA | na | |
| VRND4_UCD_2015 | 76 | PCA | na | |
| TCAP90K_NAMparents_panel | 56 | 88% - details | ||
| TCAP90K_HWWAMP_SRPN | 16 | 96% - details | ||
| TCAP90K_SWWpanel | 313 | 91% - details | ||
| TCAP90K_LeafRustPanel | 335 | 96% - details | ||
| TCAP90K_SNBWWW | 266 | PCA | na | |
| Infinium 9K v2.1 | NSGCwheat9K_4X | 542 | PCA | na |
| WorldwideDiversityPanel_9K | 2255 | |||
| NSGCwheat9K_winter_fac | 1676 | |||
| NSGCwheat9K_spring | 2197 | |||
| GMS v2.1 | 2021_GMS | 288 | 82% - details | |
| 2022_GMS | 471 | |||
| MRASeq RPN | RPN_2020 | 86 | PCA | 84% - details |
| RPN_2021 | 90 | PCA | 83% - details | |
| RPN_2022 | 80 | PCA | 83% - details | |
| RPN_2023 | 88 | PCA | 83% - details | |
| RPN_2020-23 | 286 | PCA | 84% - details | |
| RPN_2020-21 | 157 | PCA | 84% - details | |
| RPN_2021-22 | 150 | PCA | - details | |
| RPN_2022-23 | 151 | PCA | - details | |
| MRASeq RGON | RGON_2021 | 300 | PCA | 84% - details |
| RGON_2022 | 327 | PCA | 84% - details | |
| RGON_2023 | 412 | PCA | 84% - details | |
| SDSU GBS | SDSU_2022 | 157 | 96% | |
| SDSU_2023 | 155 | 96% |
